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May I ask you for the coordinates for the brain atlases used by FreeSurfer. I have a hard time finding them in the Internet. Particularly, the thalamus atlas with subnuclei is hard to find.
Thank you and best regards,
MattDear Matthias,
To get the coordinates of the FreeSurfer regions, and I suppose also the thalamic subnuclei, you can check the command “mri_segcentroids” in Freesurfer and add the appropriate flags.
In addition, you can also look into the Freesurfer forum for answers related to this topic or post a question yourself in case you have problems when using the command above.I hope this helps.
Best wishes,
Anna
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