Coordinates for the brain atlases used by FreeSurfer

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  • #150869
    Matthias Wagner
    Participant

    May I ask you for the coordinates for the brain atlases used by FreeSurfer. I have a hard time finding them in the Internet. Particularly, the thalamus atlas with subnuclei is hard to find.
    Thank you and best regards,
    Matt

    #151163

    Dear Matthias,

    To get the coordinates of the FreeSurfer regions, and I suppose also the thalamic subnuclei, you can check the command “mri_segcentroids” in Freesurfer and add the appropriate flags.
    In addition, you can also look into the Freesurfer forum for answers related to this topic or post a question yourself in case you have problems when using the command above.

    I hope this helps.

    Best wishes,

    Anna

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