Brain Atlases

A brain atlas contains the coordinates of the brain regions to be analyzed so that, for example, they can be visualized on a brain surface.

Here we provide common brain atlases in .xlsx or .txt files that can be imported into BRAPH 2.

AAL90 (automated anatomical labeling 90 regions)

aal90_atlas.xlsx
aal90_atlas.txt

 

Rolls, E. T., Joliot, M., & Tzourio-Mazoyer, N. (2015). Implementation of a new parcellation of the orbitofrontal cortex in the automated anatomical labeling atlas. NeuroImage, 122, 1–5. https://doi.org/10.1016/j.neuroimage.2015.07.075

AAL116 (automated anatomical labeling 116 regions)

aal116.xlsx
aal116.txt

Rolls, E. T., Huang, C. C., Lin, C. P., Feng, J., & Joliot, M. (2020). Automated anatomical labelling atlas 3. NeuroImage, 206, 116189. https://doi.org/10.1016/j.neuroimage.2019.116189

BNA (Brainnetome)

bna_atlas.xlsx
bna_atlas.txt

Fan, L., Li, H., Zhuo, J., Zhang, Y., Wang, J., Chen, L., Yang, Z., Chu, C., Xie, S., Laird, A. R., Fox, P. T., Eickhoff, S. B., Yu, C., & Jiang, T. (2016). The Human Brainnetome Atlas: A New Brain Atlas Based on Connectional Architecture. Cerebral Cortex, 26(8), 3508–3526. https://doi.org/10.1093/cercor/bhw157

Craddock 200

craddock_atlas.xlsx
craddock_atlas.txt

Craddock, R. C., James, G., Holtzheimer, P. E., Hu, X. P., & Mayberg, H. S. (2011). A whole brain fMRI atlas generated via spatially constrained spectral clustering. Human Brain Mapping, 33(8), 1914–1928. https://doi.org/10.1002/hbm.21333

Desikan

desikan_atlas.xlsx
desikan_atlas.txt

desikan_subcortical_atlas.xlsx
desikan_subcortical_atlas.txt

Desikan, R. S., Ségonne, F., Fischl, B., Quinn, B. T., Dickerson, B. C., Blacker, D., Buckner, R. L., Dale, A. M., Maguire, R. P., Hyman, B. T., Albert, M. S., & Killiany, R. J. (2006). An automated labeling system for subdividing the human cerebral cortex on MRI scans into gyral based regions of interest. NeuroImage, 31(3), 968–980. https://doi.org/10.1016/j.neuroimage.2006.01.021

Destrieux

destrieux_atlas.xlsx
destrieux_atlas.txt

destrieux_subcortical_atlas.xlsx
destrieux_subcortical_atlas.txt

Destrieux, C., Fischl, B., Dale, A., & Halgren, E. (2010). Automatic parcellation of human cortical gyri and sulci using standard anatomical nomenclature. NeuroImage, 53(1), 1–15. https://doi.org/10.1016/j.neuroimage.2010.06.010

Schaefer 200

Schaefer200_atlas.xlsx
schaefer200_atlas.txt

Schaefer, A., Kong, R., Gordon, E. M., Laumann, T. O., Zuo, X. N., Holmes, A. J., Eickhoff, S. B., & Yeo, B. T. T. (2017). Local-Global Parcellation of the Human Cerebral Cortex from Intrinsic Functional Connectivity MRI. Cerebral Cortex, 28(9), 3095–3114. https://doi.org/10.1093/cercor/bhx179