Reply To: Coordinates for the brain atlases used by FreeSurfer

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#151163

Dear Matthias,

To get the coordinates of the FreeSurfer regions, and I suppose also the thalamic subnuclei, you can check the command “mri_segcentroids” in Freesurfer and add the appropriate flags.
In addition, you can also look into the Freesurfer forum for answers related to this topic or post a question yourself in case you have problems when using the command above.

I hope this helps.

Best wishes,

Anna